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SRX22730057: 86
1 ILLUMINA (Illumina NovaSeq 6000) run: 146,823 spots, 72.7M bases, 20.6Mb downloads

Design: XKS_T_rep4
Submitted by: Guangdong Institute of Eco-environmental Science & Technology
Study: Tailing Biocrusts Metagenome
show Abstracthide Abstract
Degraded soils generated by mining, known as tailings, are major environmental threats to the surrounding ecosystems. The reclamation of tailings is an urgent necessity globally. Tailing reclamation, however, is often impeded due to the adverse environmental conditions, with depleted key nutrients (i.e., nitrogen N and phosphorus P) and elevated sulfur and metal(loid)s concentrations. Establishment of biocrusts, especially moss-dominated biocrusts, significantly accelerate nutrient accumulation, and therefore is an essential stage for natural reclamation of tailings. Although suggested to play an important role in biocrust formation, the microbial community composition and key metabolisms in moss-dominated biocrusts remain largely unknown. The current study aimed to elucidate the key microbial metabolisms and identify the community members that mediate these processes. Microbial sulfur (S) and arsenic (As) oxidation were found to be important energy metabolisms adopted by biocrust community in tailings. The dominant bacterial families, such as Beijerinckiaceae, Burkholderiaceae, Hyphomicrobiaceae, and Rhizobiaceae, were inferred as putative S and As oxidizers. The presence of S and As improved biocrust formation and enhanced nutrient acquisition rates (nitrogen fixation and phosphorus solubilization). Microbial S and As oxidation, as well as N fixation and P solubilization) in biocrusts might be augmented by phages that encode auxiliary metabolism genes.
Sample: Tailing_XKS_4
SAMN38505970 • SRS19718710 • All experiments • All runs
Library:
Name: Tailing_XKS_4
Instrument: Illumina NovaSeq 6000
Strategy: AMPLICON
Source: METAGENOMIC
Selection: PCR
Layout: PAIRED
Runs: 1 run, 146,823 spots, 72.7M bases, 20.6Mb
Run# of Spots# of BasesSizePublished
SRR27038320146,82372.7M20.6Mb2023-12-04

ID:
30765889

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